File 001: A Modern-Day Sherlock Holmes (平成のホームズ ?)
File 002: The Great Detective Turned Small (小さくなった名探偵 ?)
File 003: The Unwelcome Great Detective (仲間はずれの名探偵 ?)
File 004: The Sixth Smokestack (6本目の煙突 ?)
File 005: The Other Perpetrator (もう一人の犯人 ?)
File 006: From Third-Rate to Great Detective (迷探偵を名探偵に ?)
File 007: The Bloody Case of the Lovely Pop Idol (血ぬられたアイドル ?)
File 008: Resemblance (あなたに似た人 ?)
File 009: An Unfortunate Misunderstanding (不幸な誤解 ?)
High school detective Shinichi Kudo is really good at solving crimes. His best friend, Ran Mouri, is worried that one day he'll get in too deep, but he casually brushes off her concern. After noticing two suspicious men in black clothes at a festival murder scene, Shinichi sights one of them later and decides to follow him, only to be attacked from behind. The attacker, a crime syndicate lord, force-feeds Shinichi a newly-developed, undetectable poison instead of killing him outright. But instead of the poison killing him, it turns his body into that of a grade schooler. To prevent a followup attack on him or his family and friends, Shinichi adopts the pseudonym Conan Edogawa, one that he must use even in front of Ran. He quickly finds that no one will listen to a child, and is forced to solve crimes through Ran's incompetent P.I. father, Kogoro Mouri, with help from Dr. Hiroshi Agasa's voice-modulating tie and his own ingenuity. Along the way, Ran reveals her true feelings to him, and he vows to do whatever is necessary to get his original body back and return her feelings.{| sizcache="0" sizset="43" style="border-bottom: #647dd1 1px dotted; border-left: #647dd1 1px dotted; margin: 15px; border-collapse: collapse; background: #e9ebf9; border-top: #647dd1 1px dotted; border-right: #647dd1 1px dotted"
Shinichi Kudo/Conan Edogawa, Ran Mouri, Inspector Megure, The Men in Black, Professor Agasa, and Kogoro Mouri are all introduced. Pop Idol Yoko Okino is introduced in the Idol Murder Case.
Shinichi turns back into a 7 years old boy after being poisoned. Agasa invents the voice changing bow-tie, which Conan uses to solve the case of the Bloody Pop Idol (as Kogoro).
As Shinichi parts from Ran at an amusement park to check on some suspicious activities, Ran feels like she's seeing Shinichi for the last time (which will happen to have been somewhat of a premonition).
The men in black poison Shinichi after he is discovered spying on them.
Shinichi and Ran are presented as childhood friends and are shown to share a strong bond. Many other important facts about the characters are revealed (such as Shinichi's usual involvement in the Police affairs).
File 019: The Underground Room's Nightmare (地下室の悪夢 ?)
|- sizcache="0" sizset="77"
| colspan="7" sizcache="0" sizset="77" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|Conan must contend with the murder of a man who burns to death while the prime suspect has the perfect alibi; he helps a seemingly sweet and innocent girl look for her missing father; and he still has time to explore a haunted house with some of his new friends from elementary school!{| sizcache="0" sizset="78" style="border-bottom: #647dd1 1px dotted; border-left: #647dd1 1px dotted; margin: 15px; border-collapse: collapse; background: #e9ebf9; border-top: #647dd1 1px dotted; border-right: #647dd1 1px dotted"
|- sizcache="0" sizset="78"
| sizcache="0" sizset="78" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Akemi Miyano and the Detective Boys are introduced. While Ai Haibara/Shiho Miyano doesn't debut until Volume 18, she briefly appears in a silhouette.
|- sizcache="0" sizset="83"
| sizcache="0" sizset="83" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Conan is warned by Akemi of the Organization's true power, and his desire for vengeance against them is strengthened after her murder. Agasa invents the sleep dart wristwatch, which Conan first uses on Kogoro in the first case of the book.
|- sizcache="0" sizset="84"
| sizcache="0" sizset="84" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Conan runs into the Black Organization again in the case involving Masami Hirota (Akemi Miyano).
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|- sizcache="0" sizset="85"
| sizcache="0" sizset="85" style="text-align: center; background: #dee1f5"|03
| style="text-align: center; background: #dee1f5"|20-29
| style="text-align: center; background: #dee1f5"|October 18, 1994
| sizcache="0" sizset="86" style="text-align: center; background: #dee1f5"|ISBN 4-09-123373-2
| style="text-align: center; background: #dee1f5"|January 4, 2005
| sizcache="0" sizset="87" style="text-align: center; background: #dee1f5"|ISBN 1-59116-589-X
| sizcache="0" sizset="88" style="text-align: center; background: #dee1f5"|
|- sizcache="0" sizset="89"
| colspan="7" sizcache="0" sizset="89" style="min-height: 270px; padding-left: 0px"|
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Main article: Volume 3
File 020: The Hatamoto Family (籏本家の一族 ?)
File 021: The Secret Of The Impenetrable Room (密室の秘密 ?)
File 022: The Location of the Inheritance (遺産の行方 ?)
File 023: Family Obliteration (一族抹殺 ?)
File 024: Trap-Springer In The Dark (暗闇の仕掛人 ?)
File 025: The Dream That Will Not Come True (かなわぬ夢 ?)
File 026: Curious Presents (奇妙な贈り物 ?)
File 027: The Same Person (同一人物 ?)
File 028: The Mystery Of August 3rd (8月3日の謎 ?)
File 029: Safe Before Your Eyes (眼前セーフ ?)
|- sizcache="0" sizset="102"
| colspan="7" sizcache="0" sizset="102" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|Shinichi, Ran and Kogoro take a vacation aboard a cruise ship, but little do they know that the patriarch of the wealthy Hatamoto family is about to be murdered. Then, a doctor comes to the Detective Agency to learn the origin and purpose behind the monthly gifts his young son recieves.
File 035: The Last 10 Seconds Of Terror (ラスト10秒の恐怖 ?)
File 036: Code Sheet Obtained! (暗号表入手!! ?)
File 037: The ABC's of Deciphering (暗号解読のABC ?)
File 038: An Answer And Another Answer (答えもうひとつの答 ?)
File 039: The Shining Fish's True Form (光る魚の正体 ?)
|- sizcache="0" sizset="120"
| colspan="7" sizcache="0" sizset="120" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|Bloody murder is committed at a museum, reproducing a scene from a gruesome painting. Then, Conan finally finds the Men in Black that shrunk him... on a train that they're about to blow up! Finally, Conan and his friends find a treasure map that leads them on an adventure throughout Tokyo... and into the hands of Italian gangsters!{| sizcache="0" sizset="121" style="border-bottom: #647dd1 1px dotted; border-left: #647dd1 1px dotted; margin: 15px; border-collapse: collapse; background: #e9ebf9; border-top: #647dd1 1px dotted; border-right: #647dd1 1px dotted"
|- sizcache="0" sizset="121"
| sizcache="0" sizset="121" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Conan once again encounters the the 2 Men in Black, this time learning their code names: Gin and Vodka.
|}
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|- sizcache="0" sizset="124"
| sizcache="0" sizset="124" style="text-align: center; background: #dee1f5"|05
| style="text-align: center; background: #dee1f5"|40-50
| style="text-align: center; background: #dee1f5"|April 18, 1995
| sizcache="0" sizset="125" style="text-align: center; background: #dee1f5"|ISBN 4-09-123375-9
| style="text-align: center; background: #dee1f5"|May 5, 2005
| sizcache="0" sizset="126" style="text-align: center; background: #dee1f5"|ISBN 1-59116-633-0
| sizcache="0" sizset="127" style="text-align: center; background: #dee1f5"|
|- sizcache="0" sizset="129"
| colspan="7" sizcache="0" sizset="129" style="min-height: 270px; padding-left: 0px"|
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Main article: Volume 5
File 040: The Mysterious And Bandeged Man (怪人...包帯の男 ?)
File 041: The First Victim! (第一の犠牲者! ?)
File 042: Ran's In Trouble (蘭ピンチ! ?)
File 043: The Attack In The Dark! (暗闇の襲撃! ?)
File 044: The Identity Of The Murderer! (殺人鬼の正体! ?)
File 045: The Karaoke Killer! (カラオケ殺人! ?)
File 046: Suicide Or Homicide (自殺か他殺か? ?)
File 047: The Mystery Hidden In The Song (歌に秘められた謎 ?)
File 048: How Lives Cross (すれちがい... ?)
File 049: An Unfimiliar Visitor (見知らぬ訪問者. ?)
File 050: Escape And Pursuit (脱出そして追跡. ?)
|- sizcache="0" sizset="143"
| colspan="7" sizcache="0" sizset="143" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|A vicious murderer whose face is covered in bandages is on the lose. Will Conan be able to catch him before he strikes again? Later, Conan's friends Ran and Sonoko want to blow off some steam but they get more than they bargain for when they discover murder at the karaoke box. Finally, a woman claiming to be Conan's real mother returns to claim him!{| sizcache="0" sizset="144" style="border-bottom: #647dd1 1px dotted; border-left: #647dd1 1px dotted; margin: 15px; border-collapse: collapse; background: #e9ebf9; border-top: #647dd1 1px dotted; border-right: #647dd1 1px dotted"
|- sizcache="0" sizset="144"
| sizcache="0" sizset="144" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Ran's best friend Sonoko Suzuki is introduced. Two mysterious characters are introduced, although their identities are not revealed until the next volume.
|- sizcache="0" sizset="146"
| sizcache="0" sizset="146" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Conan uses Sonoko to solve a case for the first time in the case of the Bandaged Man. While he has to use his Voice-Changing Bowtie over the intercom, Conan solves the Karaoke Box Murder Case as Shinichi Kudo.
|}
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| colspan="7" style="padding-bottom: 0px; padding-left: 0px; padding-right: 0px; background: #647dd1; height: 3px; padding-top: 0px"|
|- sizcache="0" sizset="147"
| sizcache="0" sizset="147" style="text-align: center; background: #dee1f5"|06
| style="text-align: center; background: #dee1f5"|51-60
| style="text-align: center; background: #dee1f5"|July 18, 1995
| sizcache="0" sizset="148" style="text-align: center; background: #dee1f5"|ISBN 4-09-123376-7
| style="text-align: center; background: #dee1f5"|July 5, 2005
| sizcache="0" sizset="149" style="text-align: center; background: #dee1f5"|ISBN 1-59116-838-4
| sizcache="0" sizset="150" style="text-align: center; background: #dee1f5"|
|- sizcache="0" sizset="152"
| colspan="7" sizcache="0" sizset="152" style="min-height: 270px; padding-left: 0px"|
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Main article: Volume 6
File 051: The Truth Under The Mask (仮面の下の真実 ?)
File 052: Three Visitors (三人の訪問客 ?)
File 053: Alibis Of The Three (三人のアリバイ ?)
File 054: Answering Machine Mystery (留守番電話の謎 ?)
File 055: Words On The Chest (タンスの言葉 ?)
File 056: Formation! The Detective Boys (結成!少年探偵団 ?)
File 057: Mysterious Brothers (ナゾの兄弟 ?)
File 058: Moving Corpse Mystery (動く死体の謎 ?)
File 059: Festival Night (祭りの夜 ?)
File 060: A Perfect Alibi (アリバイは完璧!? ?)
|- sizcache="0" sizset="165"
| colspan="7" sizcache="0" sizset="165" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|Who is this mysterious masked man? And why does he know Conan's true identity? Plus an investigation of an extramarital affair leads to bloody murder! Also, Conan's elementary school friends decide to become super sleuths when they form the Detective Boys! But will they get into more trouble than they can handle?
Inspector Sango Yokomizo is introduced in the Festival Night Murder Case.
The mysterious woman and Masked Man are revealed to be Shinichi's parents, Yukiko and Yusaku. Conan, Genta, Mitsuhiko, and Ayumi officially form the Detective Boys in the Mysterious Brothers Murder Case.
File 062: The Invitation To Tsukikage Island (月影島への招待状 ?)
File 063: The Piano's Curse (ピアノの呪い ?)
File 064: Left-Behind Music (残された楽譜 ?)
File 065: The Hellfire Secret (業火の秘密 ?)
File 066: Blood-Stained Button (血染めのボタン ?)
File 067: The Secret Of The Name!! (名前の秘密!! ?)
File 068: Shinichi's Sweetheart!! (新一の恋人!! ?)
File 069: Meitantei Ran (名探偵 蘭!? ?)
File 070: A Time Limit On Life (命の時間切れ!? ?)
|- sizcache="0" sizset="189"
| colspan="7" sizcache="0" sizset="189" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|On a remote island, a job request comes in from a pianist who's been dead for over 10 years. Can Conan solve the case of the cursed piano? Later, a mysterious woman shows up claiming to be Shinichi's girlfriend. The only problem is, Conan's never seen her before in his life!
First appearances of soccer players Hideo Akagi and Naoki Uemura.
In the Piano Sonata Murder Case, the culprit Seiji Asai kills himself before Conan can prove his guilt, becoming the only stand alone culprit to escape from him.
Ryoko Akagi claims to be Shinichi's girlfriend, causing Ran to become jealous and try to learn more about her.
File 077: Secret Of The Spot Of The Fall (落下地点の秘密 ?)
File 078: The Bride's Tragedy (花嫁の悲劇 ?)
File 079: The Forbidden Lemon Tea!? (禁断のレモンティー!? ?)
File 080: A Reason to Kill (殺しの理由 ?)
|- sizcache="0" sizset="213"
| colspan="7" sizcache="0" sizset="213" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|Conan enters a mystery contest where he must be the first to discover the true identity of the enigmatic Night Baron. But the fun and games end when the contest turns into a real-life murder. Later, Ran's middle school teacher is about to get married. But the wedding bells stop ringing when someone tries to murder the beautiful bride.
Superintendent Kiyonaga Matsumoto is introduced in the Tragic Bride Murder Case.
Matsumoto-sensei recalls that Shinichi was a good violin player but completely tone-deaf as a singer.
File 081: A Dangerous Game Of Hide-And-Seek (危ないかくれんぼ ?)
File 082: Follow The Voice!! (声を追え!! ?)
File 083: What! Really (えっ!本当!? ?)
File 084: Kogorou's Class Reunion (小五郎の同窓会 ?)
File 085: An Unexpected Hint (意外なヒント ?)
File 086: The Two Benkei Standing Deaths (弁慶の仁王立ち ?)
File 087: Choosing A Groom (花婿選び ?)
File 088: The Encroching Shadow (忍び寄る影 ?)
File 089: Another Body (死体がもうひとつ... ?)
File 090: Random Murder (無差別殺人!? ?)
|- sizcache="0" sizset="234"
| colspan="7" sizcache="0" sizset="234" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|The Detective Boys takes action! While playing hide and seek, first-grader Ayumi discovers a chopped-off head. Will Conan and his friends be able to save Ayumi from a serial murderer? When Kogoro Mouri attends a reunion of his college friends, one of them ends up with a bullet hole to her temple and a gun in her hand. Was it suicide or murder?! Later, Conan, Kogoro, and Ran attend the birthday party of the daughter of a wealthy financier. But Conan's deductive skills are put to the test when the birthday girl ends up missing and someone turns up dead.{| sizcache="0" sizset="237" style="border-bottom: #647dd1 1px dotted; border-left: #647dd1 1px dotted; margin: 15px; border-collapse: collapse; background: #e9ebf9; border-top: #647dd1 1px dotted; border-right: #647dd1 1px dotted"
|- sizcache="0" sizset="237"
| sizcache="0" sizset="237" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|Because of how personal the Class Reunion Murder Case is to Kogoro, Conan drops him hints to solve it rather than knocking him out and impersonating him.
|- sizcache="0" sizset="238"
| sizcache="0" sizset="238" style="border-bottom: medium none; border-left: medium none; padding-right: 10px; border-top: medium none; border-right: medium none"|A little of Kogoro's past and background is revealed, particularly that he was once a blackbelt in judo.
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| colspan="7" style="padding-bottom: 0px; padding-left: 0px; padding-right: 0px; background: #647dd1; height: 3px; padding-top: 0px"|
|- sizcache="0" sizset="239"
| sizcache="0" sizset="239" style="text-align: center; background: #dee1f5"|10
| style="text-align: center; background: #dee1f5"|91-100
| style="text-align: center; background: #dee1f5"|April 18, 1996
| sizcache="0" sizset="240" style="text-align: center; background: #dee1f5"|ISBN 4-09-123380-5
| style="text-align: center; background: #dee1f5"|March 21, 2006
| sizcache="0" sizset="241" style="text-align: center; background: #dee1f5"|ISBN 1-4215-0316-6
| sizcache="0" sizset="242" style="text-align: center; background: #dee1f5"|
|- sizcache="0" sizset="244"
| colspan="7" sizcache="0" sizset="244" style="min-height: 270px; padding-left: 0px"|
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Main article: Volume 10
File 091: The Water Time-Difference Trick (水の時間差トリック ?)
File 092: The Great Detective Of The West (西の名探偵 ?)
File 093: Double Reasoning (二人の推理 ?)
File 094: The Great Detective Of The East (東の名探偵...!? ?)
File 095: The Great Detective Of The East Appears! (東の名探偵現る!? ?)
File 096: A Burning Body (熱いからだ ?)
File 097: A Psychopath Prowls (忍び寄る殺人鬼 ?)
File 098: An Additional Person (もう一人の乗客 ?)
File 099: Snowstorm Tragedy (吹雪が呼んだ惨劇 ?)
File 100: The Last Words (最後の言葉 ?)
|- sizcache="0" sizset="257"
| colspan="7" sizcache="0" sizset="257" style="padding-bottom: 5px; padding-left: 5px; padding-right: 5px; padding-top: 5px"|A diplomat is found dead in his study and Conan's on the case. But what exactly happened? The elder statesman was definitely murdered, but the door and windows to his private chamber were all locked from the inside. How in the world did the killer escape? Later as if that wasn't bad enough, Conan and his pals get swept up in a missing person caper at the local library. Murder, kidnapping and drug smuggling aren't exactly the sorts of things condoned by librarians. What's the connection? Conan thinks he knows the answer but he's got more pressing things to worry about-like escaping the deadly grasp of the fiendish miscreant!
Heiji Hattori, Shinichi's self-proclaimed rival from the West, makes his first appearance.
Conan briefly changes back into Shinichi for the first time when Heiji gives him a drank of a strange alcohol. This is the first of several times that Shinichi requests that he isn't credited for solving a case (To prevent Gin and Vodka from discovering that he is alive).